我正在将Cython内存视图转换为numpy数组(以便能够在纯Python代码中使用它):
from libc.stdlib cimport realloc cimport numpy as np DTYPE = np.float64 ctypedef np.float64_t DTYPE_t cpdef np.ndarray[DTYPE_t] compute(DTYPE_t[:,::1] data): cdef unsigned int Nchannels = data.shape[0] cdef unsigned int Ndata = data.shape[1] cdef DTYPE_t* output = NULL cdef DTYPE_t[::1] mv output =realloc(output, Ndata*sizeof(output)) if not output: raise MemoryError() mv = output mv[10:Ndata-10] = 0.0 # various calculations... return np.asarray(mv, dtype=DTYPE, order='C')
它编译,但编译器给出以下警告:
/Users/vlad/anaconda/lib/python2.7/site-packages/numpy/core/include /nump/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
我在setup.py中添加了建议的指令:
from distutils.core import setup, Extension from Cython.Build import cythonize import numpy filename = 'agents3.pyx' agents_module = Extension( 'Agents', sources = [filename], define_macros = [('NPY_NO_DEPRECATED_API', 'NPY_1_7_API_VERSION')], include_dirs = [numpy.get_include()], ) setup (name = 'Agents', ext_modules = cythonize(agents_module) )
现在它不会编译,它说:
Vlads-MacBook-Pro:program vlad$ python setup.py build_ext --inplace Compiling agents3.pyx because it changed. Cythonizing agents3.pyx running build_ext building 'Agents' extension gcc -fno-strict-aliasing -I/Users/vlad/anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/Users/vlad/anaconda/lib/python2.7/site-packages/numpy/core/include -I/Users/vlad/anaconda/include/python2.7 -c agents3.c -o build/temp.macosx-10.5-x86_64-2.7/agents3.o agents3.c:2273:52: error: use of undeclared identifier 'NPY_C_CONTIGUOUS' __pyx_t_2 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_C_CONTIGUOUS) != 0)) != 0); ^ agents3.c:2311:52: error: use of undeclared identifier 'NPY_F_CONTIGUOUS' __pyx_t_1 = ((!(PyArray_CHKFLAGS(__pyx_v_self, NPY_F_CONTIGUOUS) != 0)) != 0); ^ agents3.c:2474:42: error: no member named 'descr' in 'struct tagPyArrayObject' __pyx_t_4 = ((PyObject *)__pyx_v_self->descr); ~~~~~~~~~~~~ ^ agents3.c:4026:27: error: no member named 'base' in 'struct tagPyArrayObject' Py_XDECREF(__pyx_v_arr->base); ~~~~~~~~~~~ ^ /Users/vlad/anaconda/include/python2.7/object.h:823:34: note: expanded from macro 'Py_XDECREF' #define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0) ^ agents3.c:4026:27: error: no member named 'base' in 'struct tagPyArrayObject' Py_XDECREF(__pyx_v_arr->base); ~~~~~~~~~~~ ^ /Users/vlad/anaconda/include/python2.7/object.h:823:64: note: expanded from macro 'Py_XDECREF' #define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0) ^ /Users/vlad/anaconda/include/python2.7/object.h:772:24: note: expanded from macro 'Py_DECREF' --((PyObject*)(op))->ob_refcnt != 0) \ ^ agents3.c:4026:27: error: no member named 'base' in 'struct tagPyArrayObject' Py_XDECREF(__pyx_v_arr->base); ~~~~~~~~~~~ ^ /Users/vlad/anaconda/include/python2.7/object.h:823:64: note: expanded from macro 'Py_XDECREF' #define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0) ^ /Users/vlad/anaconda/include/python2.7/object.h:775:34: note: expanded from macro 'Py_DECREF' _Py_Dealloc((PyObject *)(op)); \ ^ /Users/vlad/anaconda/include/python2.7/object.h:762:15: note: expanded from macro '_Py_Dealloc' (*Py_TYPE(op)->tp_dealloc)((PyObject *)(op))) ^ /Users/vlad/anaconda/include/python2.7/object.h:115:47: note: expanded from macro 'Py_TYPE' #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) ^ agents3.c:4026:27: error: no member named 'base' in 'struct tagPyArrayObject' Py_XDECREF(__pyx_v_arr->base); ~~~~~~~~~~~ ^ /Users/vlad/anaconda/include/python2.7/object.h:823:64: note: expanded from macro 'Py_XDECREF' #define Py_XDECREF(op) do { if ((op) == NULL) ; else Py_DECREF(op); } while (0) ^ /Users/vlad/anaconda/include/python2.7/object.h:775:34: note: expanded from macro 'Py_DECREF' _Py_Dealloc((PyObject *)(op)); \ ^ /Users/vlad/anaconda/include/python2.7/object.h:762:45: note: expanded from macro '_Py_Dealloc' (*Py_TYPE(op)->tp_dealloc)((PyObject *)(op))) ^ agents3.c:4035:16: error: no member named 'base' in 'struct tagPyArrayObject' __pyx_v_arr->base = __pyx_v_baseptr; ~~~~~~~~~~~ ^ agents3.c:4070:30: error: no member named 'base' in 'struct tagPyArrayObject' __pyx_t_1 = ((__pyx_v_arr->base == NULL) != 0); ~~~~~~~~~~~ ^ agents3.c:4093:44: error: no member named 'base' in 'struct tagPyArrayObject' __Pyx_INCREF(((PyObject *)__pyx_v_arr->base)); ~~~~~~~~~~~ ^ agents3.c:1065:37: note: expanded from macro '__Pyx_INCREF' #define __Pyx_INCREF(r) Py_INCREF(r) ^ /Users/vlad/anaconda/include/python2.7/object.h:767:18: note: expanded from macro 'Py_INCREF' ((PyObject*)(op))->ob_refcnt++) ^ agents3.c:4094:41: error: no member named 'base' in 'struct tagPyArrayObject' __pyx_r = ((PyObject *)__pyx_v_arr->base); ~~~~~~~~~~~ ^ 11 errors generated. error: command 'gcc' failed with exit status 1 Vlads-MacBook-Pro:program vlad$
我该怎么办?可以保留已弃用的API调用吗?它试图访问该base
字段 - 但我没有这样做,这是Cython的错.我只是将一个内存视图转换为一个numpy数组.是否有另一种更清洁/更安全的方式?